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A collaborative website for the Circuits and Biology group.
A collaborative website for Prof. [[Marc Riedel]]'s research group at the [http://www.umn.edu University of Minnesota].


==About the Group==
==About the Group==
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* See our "[[People]]" page for a list of everyone in the group.  
* See our "[[People]]" page for a list of everyone in the group.  
* See our "[[Research]]" page for an overview of our research activities.
* See our "[[Research]]" page for an overview of our research activities.
* See our "[[Papers,_Theses,_and_Presentations|Publications]]" page for our papers, theses, proposals, and slides.
* See our "[[Papers, Presentations, Theses, Proposals, and Patents]]" page for our papers, presentations, theses, and funding proposals.
* See our "[[Tools]]" page for software tools that we have developed.
* See our "[[Teaching]]" page for courses that [[Marc Riedel | Marc]] teaches.


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==Announcements==
==Announcements==


* We received a $100,000 grant from [https://www.seagate.com| Seagate] on DNA storage.
* We welcome two new postdocs, [[Arnav Solanki]] and Farzad Razi!
* We received a $200,000 NSF Grant for [https://www.nsf.gov/awardsearch/showAward?AWD_ID=2036064&HistoricalAwards=false| computational work on COVID 19].
* Our paper on computing with acids and bases has appeared in '''[https://www.nature.com/articles/s41467-023-36206-8 Nature Communications]''.'''''
* Our paper [[Media:Salehi Liu Riedel Parhi Computation of Mathematical Functions using DNA via Fractional Coding.pdf| Computation of Mathematical Functions using DNA via Fractional via Fractional Coding]] has appeared in [https://www.nature.com/articles/s41598-018-26709-6 Nature Scientific Reports].
* [[Ajay Manicka|Ajay]] is leaving our group (our loss). He is joining the Ph.D. program at MIT (their gain).
* With colleagues from the [https://ece.illinois.edu/directory/profile/milenkov University of Illinois] and the [http://users.ece.utexas.edu/~soloveichik/ University of Texas], we have received a $1.8 million grant from the [https://www.darpa.mil DARPA] [https://www.darpa.mil/program/molecular-informatics Molecular Informatics Program] to pursue research on [[Media:Darpa-grant-storage-with-native-dna.pdf|DNA Storage]].
* [[Arnav Solanki|Arnav]] has completed his [https://mriedel.ece.umn.edu/wiki/images/0/0a/Solanki_Carving_a_Niche_in_the_Intersection_of_Computer_Engineering_and_Molecular_Biology.pdf Ph.D.]  
* [https://sites.google.com/a/umn.edu/mhassannajafi/home M. Hassan Najafi] graduated and has accepted a tenure-track position at the [https://louisiana.edu University of Louisiana].
* We have received a $1,000,000 grant from the [http://www.nsf.gov NSF] for research on [https://www.nsf.gov/awardsearch/showAward?AWD_ID=2227578&HistoricalAwards=false DNA storage] (joint with [http://www.protobiology.org/indexd.php Kate Adamala] and [https://users.ece.utexas.edu/~soloveichik/ David Soloveichik]).
* [https://www.engr.uky.edu/directory/salehi-sayed-ahmad Ahmad Salehi] graduated and has accepted a tenure-track position at the [https://www.engr.uky.edu University of Kentucky].
* Marc was named '''[https://cse.umn.edu/ece/news/professor-marc-riedel-named-fellow-oracles-research-fellows-program Oracle Research Fellow].'''
* Our paper [[Media:Najafi_Lilja_Riedel_Bazargan_Polysynchronous_Clocking_Exploiting_the_Skew_Tolerance_of_Stochastic_Circuits.pdf | on Polysynchronous Clocking]] was the [https://ieeexplore.ieee.org/document/7911306 IEEE Transaction on Computers] "Feature Paper of the Month."
* We have received a $200,000 grant from [https://www.oracle.com/research/ Oracle].  
* Our work on [[Papers,_Theses,_and_Presentations#Computing_with_Random_Bit_Streams | A Deterministic Approach to Stochastic Computing]] has received critical acclaim: it upends the conventional thinking on stochastic computing (a field that we pioneered back in 2008).
* We have received an $118,000 grant from [https://www.seagate.com| Seagate] on DNA storage.
* [[Ahmad Salehi|Ahmad]] received the [http://www.grad.umn.edu/fellowships/ddf/ Doctoral Dissertation Fellowship], a prestigious university-wide award for top doctoral candidates at the [http://www.umn.edu University of Minnesota].
* We have received a $200,000 NSF grant for [https://www.nsf.gov/awardsearch/showAward?AWD_ID=2036064&HistoricalAwards=false| computational work on COVID 19].
* We received two NSF Grants in 2014:
* Our paper[[Media:Salehi Liu Riedel Parhi Computation of Mathematical Functions using DNA via Fractional Coding.pdf| Computation of Mathematical Functions using DNA via Fractional via Fractional Coding]] has appeared in [https://www.nature.com/articles/s41598-018-26709-6 Nature Scientific Reports].
** [[Media:Bazargan_Frisbie_Harjani_Lilja_Riedel_Design_in_a_Post-CMOS_Era_when_Transistor_Counts_Matter_Again.pdf | Back to the Future with Printed, Flexible Electronics –Design in a Post-CMOS Era when Transistor Counts Matter Again]] <br>($800,000 joint with [https://www.ece.umn.edu/~kia/ Kia Bazargan], [http://www.ece.umn.edu/~harjani/ Ramesh Harjani], [http://www.arctic.umn.edu/lilja.shtml David Lilja], and [http://research.cems.umn.edu/frisbie Dan Frisbie])
* We have received a $2,200,000 grant from the [https://www.darpa.mil DARPA] [https://www.darpa.mil/program/molecular-informatics Molecular Informatics Program] to pursue research on [https://mriedel.ece.umn.edu/wiki/images/9/9f/Riedel_Storage_and_Processing_with_Native_DNA.pdf DNA computing] (joint with colleagues [https://ece.illinois.edu/directory/profile/milenkov Olgica Milenkovic] and the [http://users.ece.utexas.edu/~soloveichik/ David Soloveichik]).
** [[Media:Riedel_Parhi_Advanced_Digital_Signal_Processing_with_DNA.pdf | Advanced Signal Processing with DNA]]<br>($300,000 joint with [http://www.ece.umn.edu/~parhi/ Keshab Parhi])
* [https://sites.google.com/a/umn.edu/mhassannajafi/home Hassan] has completed his Ph.D. He has accepted a tenure-track position at the [https://louisiana.edu University of Louisiana].
* [[John Backes | John]] has earned his Ph.D. He joined [http://www.rockwellcollins.com/ Rockwell Collins] in April, 2013
* [https://www.engr.uky.edu/directory/salehi-sayed-ahmad Ahmad] has completed his [https://mriedel.ece.umn.edu/wiki/images/1/18/Salehi_Digital_Logic_and_Signal_Processing_Computations_with_Molecular_Reactions.pdf Ph.D.] He has accepted a tenure-track position at the [https://www.engr.uky.edu University of Kentucky].
* [[Mustafa Altun | Mustafa]] has earned his Ph.D. He joined the [http://www.itu.edu.tr/en/ Istanbul Technical University] as an Assistant Professor in September, 2012.
* Our paper [[Media:Najafi_Lilja_Riedel_Bazargan_Polysynchronous_Clocking_Exploiting_the_Skew_Tolerance_of_Stochastic_Circuits.pdf | on polysynchronous clocking]] was the [https://ieeexplore.ieee.org/document/7911306 IEEE Transaction on Computers] "Feature Paper of the Month."
* [[Hua Jiang| Hua]] has earned his Ph.D. He joined  [http://www.synopsys.com/ Synopsys] in June, 2012.
* Our work on [[Papers,_Theses,_and_Presentations#Computing_with_Random_Bit_Streams |a deterministic approach to stochastic computing]] has received critical acclaim: it upends the conventional thinking on stochastic computing (a field that we pioneered back in 2008).
* The [http://www.umn.edu/regents/ Board of Regents] of the [http://www.umn.edu University of Minnesota] has conferred [http://regents.umn.edu/sites/default/files/policies/FacultyTenure1.pdf indefinite tenure] on [[Marc Riedel | Marc]] in May, 2012.
* [[Ahmad Salehi|Ahmad]] has received the [http://www.grad.umn.edu/fellowships/ddf/ Doctoral Dissertation Fellowship].
* [[John Backes| John]] received the [http://www.grad.umn.edu/fellowships/ddf/ Doctoral Dissertation Fellowship], a prestigious university-wide award for top doctoral candidates at the [http://www.umn.edu University of Minnesota], in May, 2012.
* We received two NSF Grants:
* Our group received a $400,000 grant from the [[Papers,_Theses,_and_Presentations#Funding Proposals | NSF Computing and Communications Foundations Program]] in May, 2012.
** $800,000 for a proposal titled [[Media:Bazargan_Frisbie_Harjani_Lilja_Riedel_Design_in_a_Post-CMOS_Era_when_Transistor_Counts_Matter_Again.pdf | Back to the Future with Printed, Flexible Electronics Design]] (joint with UMN colleagues [https://www.ece.umn.edu/~kia/ Kia Bazargan], [http://www.ece.umn.edu/~harjani/ Ramesh Harjani], [http://www.arctic.umn.edu/lilja.shtml David Lilja], and [http://research.cems.umn.edu/frisbie Dan Frisbie]),
* [[Weikang Qian | Weikang]] has earned his Ph.D. He joined the [http://umji.sjtu.edu.cn University of Michigan&ndash;Shanghai Jiao Tong University Joint Institute] as an Assistant Professor in September 2011.
** $400,000 for a proposal titled [[Media:Riedel_Parhi_Advanced_Digital_Signal_Processing_with_DNA.pdf | Advanced Signal Processing with DNA]] (joint with UMN colleague [http://www.ece.umn.edu/~parhi/ Keshab Parhi]).
* [[Weikang Qian | Weikang]] received the [http://www.grad.umn.edu/fellowships/ddf/ Doctoral Dissertation Fellowship], a prestigious university-wide award for top doctoral candidates, in May, 2010.
* [[John Backes | John]] has earned his Ph.D. He joined [http://www.rockwellcollins.com/ Rockwell Collins].  
* Our group received a $200,000 grant from the [[Papers,_Theses,_and_Presentations#Funding Proposals | NSF Computing and Communications Foundations Program]] in June, 2009.
* [[Mustafa Altun | Mustafa]] has earned his Ph.D. He has accepted a tenure-track position at the [http://www.itu.edu.tr/en/ Istanbul Technical University].
* Our group received a $500,000 grant with the [[Papers,_Theses,_and_Presentations#Funding Proposals | NSF CAREER Award]], in June, 2009.
* [[Hua Jiang| Hua]] has earned his Ph.D. He joined [http://www.synopsys.com/ Synopsys].  
* [[Marc Riedel | Marc]] received a [[Papers,_Theses,_and_Presentations#Funding Proposals | NSF CAREER Award]], the National Science Foundation's most prestigious award in support of junior faculty, in June, 2009.
* We received a $400,000 grant from the NSF for research on [http://mriedel.ece.umn.edu/wiki/images/9/93/Parhi_Riedel_Digital_Signal_Processing_with_Biomolecular_Reactions.pdf signal processing with DNA]  (joint with UMN colleague [http://www.ece.umn.edu/~parhi/ Keshab Parhi]).  
* Our group received a $325,000 grant from the [http://www.fena.org Center on Functional Engineered Nano Architectonics (FENA)], a joint [http://www.src.org Semiconductor Research Corporation (SRC)]/[http://www.defense.gov Department of Defense] research center, in August, 2006.
* [[John Backes|John]] received the [http://www.grad.umn.edu/fellowships/ddf/ Doctoral Dissertation Fellowship].
* We received a $300,000 grant from the NSF for research on [http://mriedel.ece.umn.edu/wiki/images/3/36/Riedel_Bazargan_Harjani_Lilja_Digital_Yet_Deliberately_Random_Synthesizing_Logical_Computation_on_Stochastic_Bit_Streams.pdf stochastic computing] (joint with UMN colleagues [https://www.ece.umn.edu/~kia/ Kia Bazargan], [http://www.ece.umn.edu/~harjani/ Ramesh Harjani], and [http://www.arctic.umn.edu/lilja.shtml David Lilja]).
* The [http://www.umn.edu/regents/ Board of Regents] of the [http://www.umn.edu University of Minnesota] has conferred [http://regents.umn.edu/sites/default/files/policies/FacultyTenure1.pdf indefinite tenure] on [[Marc Riedel |Marc]].
* [[Weikang Qian |Weikang]] has earned his Ph.D. He has accepted a tenure-track position at the [http://umji.sjtu.edu.cn University of Michigan&ndash;Shanghai Jiao Tong University Joint Institute].
* [[Weikang Qian |Weikang]] has received the [http://www.grad.umn.edu/fellowships/ddf/ Doctoral Dissertation Fellowship].
* We have received a $100,000 grant for research on [http://cctbio.ece.umn.edu/wiki/images/4/49/Kaznessis_Schmidt_Riedel_Computational_Methods_for_Forward_Biological_Engineering.pdf synthetic biology] from the [https://cse.umn.edu/ Digital Technology Center] (joint with UMN colleagues [https://www.cems.umn.edu/people/faculty/yiannis-kaznessis Yiannis Kaznessis] and [http://cbs.umn.edu/schmidt-dannert-lab/home Claudia Dannert Schmidt]).
* We have received a $200,000 grant from the NSF for research on [http://mriedel.ece.umn.edu/wiki/images/7/7d/Parhi_Riedel_Synthesizing_Signal_Processing_Functions_with_Biochemical_Reactions.pdf signal processing with DNA]  (joint with UMN colleague [http://www.ece.umn.edu/~parhi/ Keshab Parhi]).
* We have received a $500,000 NSF grant along with Marc's [http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=0845650&WT.z_pims_id NSF CAREER Award].
* [[Marc Riedel |Marc]] has received the [http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=0845650&WT.z_pims_id NSF CAREER Award] for his research on "[https://mriedel.ece.umn.edu/wiki/images/8/8a/Riedel_Computing_with_Things_Small_Wet_and_Random_Design_Automation_for_Digital_Computation_with_Nanoscale_Technologies_and_Biological_Processes.pdf '''things small, wet, and random''']." This is the National Science Foundation's most prestigious award in support of junior faculty.
* We have received a $78,000 grant for research on [http://cctbio.ece.umn.edu/wiki/images/4/48/Riedel_Tackling_the_Stochastic_Simulation_of_Biochemical_Networks_with_Real_Computing_Power.pdf stochastic simulation of chemical reactions] from the [https://r.umn.edu/academics-research/graduate/bicb BICB program] (joint with [https://en.wikipedia.org/wiki/IBM_Rochester IBM Rochester]).
* We have received a $325,000 grant for research on [http://mriedel.ece.umn.edu/wiki/images/8/8e/Riedel_Exploiting_Percolation_and_Randomness_in_the_Concurrent_Logical_and_Physical_Design_of_Digital_Nanoscale_Circuits.pdf probabilistic computing] from the Center on Functional Engineered Nano Architectonics (FENA), a joint [http://www.src.org Semiconductor Research Corporation (SRC)]/[http://www.defense.gov Department of Defense] research center.
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Latest revision as of 08:31, 21 October 2023


A collaborative website for Prof. Marc Riedel's research group at the University of Minnesota.

About the Group

The group consists of Prof. Marc Riedel and his students in the Department of Electrical and Computer Engineering at the University of Minnesota. Our research activities encompass topics in logic synthesis and verification, as well as in synthetic and computational biology. A broad theme is the application of expertise from digital circuit design to new areas.

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Announcements


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